YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157762932
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.88
Transmembrane Helix	19	41	0.92
Non-Cytoplasmic	42	448	0.93
Transmembrane Helix	449	471	0.84
Cytoplasmic	472	478	0.81
Transmembrane Helix	479	498	0.94
Non-Cytoplasmic	499	508	0.81
Transmembrane Helix	509	530	0.87
Cytoplasmic	531	548	0.80
Transmembrane Helix	549	573	0.86
Non-Cytoplasmic	574	584	0.70
Transmembrane Helix	585	606	0.76
Cytoplasmic	607	618	0.59
Transmembrane Helix	619	637	0.87
Non-Cytoplasmic	638	650	0.65
Transmembrane Helix	651	674	0.79
Cytoplasmic	675	770	0.70
Transmembrane Helix	771	791	0.93
Non-Cytoplasmic	792	1277	0.70
Transmembrane Helix	1278	1295	0.48
Cytoplasmic	1296	1307	0.84
Transmembrane Helix	1308	1324	0.96
Non-Cytoplasmic	1325	1332	0.64
Transmembrane Helix	1333	1355	0.85
Cytoplasmic	1356	1374	0.83
Transmembrane Helix	1375	1398	0.91
Non-Cytoplasmic	1399	1404	0.83
Transmembrane Helix	1405	1425	0.83
Cytoplasmic	1426	1434	0.78
Transmembrane Helix	1435	1456	0.63
Non-Cytoplasmic	1457	1550	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTGSPGETK RERFVMFEAF TLGSIFVIAA VGIGVGAYLH VTVHSHNSCS MTFMYRKLQF  60
   61 LDIPVPDNEV SHYSLSVYNE GYRWWNRSTI DINQIPVLFI PGSQGSAKQV RSIASVMQNK 120
  121 TEMRQSVFSF RFFAVDFDEE KTFMNGHTVN RQLDYVMKAI RKIQSLMRVK RRIVLIGHSY 180
  181 GGMVALLTTV HPDFHDDIEL VIVKGAPITK TPILNDWTTL RLNKLLTTKW DLLQASDLKH 240
  241 VGVVAYTGGL RDFQIPDEWS IMRNVTHRPI WAVGGVSDLG ADHLAILWCN EFVRHVSRVL 300
  301 YFYGEHFNKW TGRRVVQTFY KDEMDSNIKQ AKLVRHIDEI PTKEIQIGKQ YEKLHIPEEQ 360
  361 FVLLLKPERF QVFSVRVNAT CVNSMITVRH HESMMHFENA TDGVVQTWIY RAADKEKVRF 420
  421 LLNVNAPCHV DVQMTNSLII YLWRFYEVMF SHLNEVGATF ITTSCFFAIL LREPPLRSAG 480
  481 VIGLINVAAL GAVLHGTLDT SDTMALPMAI GYFMALGYRF LCFLVDVLIL SRLQFLKVAH 540
  541 KAFRDDMLIN GLFFIGSALT ITASNEGAIF LIVCMAFRHH PRAVLLVAPA LVPHILKLVG 600
  601 VPLFTIDSIT VHGLQYHPAF YTFLMYLWGL FSTLHVGEVT MRVMIYGITP AFLYLVSSPL 660
  661 ELYSGFALLI LSCARFVSYS TRRPPVEVTS PVTASEASRS YTEQLQQDQR QKQTYNFRNR 720
  721 KNFMCLIYSF RFEIVSTFID FFALVPPYRV LMDEKEKARA FKEFFTSKTR WVGFIAIVLY 780
  781 LAVVVSTYHF SPKSFIKHRD SLNCQPLNFT DHISMKPLLR GYGKLKTFEL MEFVLPEDAH 840
  841 ENEVPVSTIE KSIEQKPTEH EMEPTLDGKK SNNKEANITS ENKNTNITSH DENVKTTSVA 900
  901 ITESKHPKKT RTIPVLFWPG DKDHVDRHLF LAKLMQKRTK KSSFRFRFYS MDLHMSLIWY 960
  961 SLYTIENHNM LISYSLEEIQ KLHPDERPLH MSHGLGSVHA IQTVMIERER FRNKSNNFEN1020
 1021 VPVDDVTPGM MIFESSPWLL PGHYENTPMS RMRTLMFAFR NDTYKTGAVS FEAGFDDTTA1080
 1081 DPSWLHRKNA QRIPVWTIDD VPDNGLTGNR MAKCAPYLDT VADFLMFYGE RRDRETGKSV1140
 1141 AETFHDVWES RKRGPLPNGW EKDRQKGAVT VQVGEKHSIT VNGVQWIDVD VQRNKSIILY1200
 1201 ITGPCLTAAT IIRGHKFIKR KDELMNGTGF EFGIYQLKPY EDVKLLLESS ITCSITIETN1260
 1261 PWWLEYTQKF YYALVFDPYH FWVGAQITST LLAFFECEKR SFRLEHQLYI YVFFIAALFY1320
 1321 HTLYTYGFQL PGLICGAGFA LSIHFVCSTF DDLVLIRWTT TSLDAYYHRR SHFSAFLCLA1380
 1381 LLASVLSTGL STMMVLVLYS LENRAFLAIP TLVTHIPILY RIWYIPFVME YEPRLCGTLL1440
 1441 FSILCYVEYM FGNSFWGRVE RDRSLLGTLA KRLRQSLPER FSRRDIRMCL YPVLLFILVK1500
 1501 ELTLEWIYGL EIFLVALNRK CQRHTPTQLR QNPIDLQELE EEYLEQEDED