YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39591950, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	68	0.90
Transmembrane Helix	69	87	0.79
Non-Cytoplasmic	88	112	0.79
Transmembrane Helix	113	135	0.89
Cytoplasmic	136	142	0.87
Transmembrane Helix	143	167	0.83
Non-Cytoplasmic	168	179	0.72
Transmembrane Helix	180	199	0.77
Cytoplasmic	200	279	0.84
Transmembrane Helix	280	304	0.83
Non-Cytoplasmic	305	334	0.95
Transmembrane Helix	335	356	0.87
Cytoplasmic	357	399	0.95
Transmembrane Helix	400	422	0.86
Non-Cytoplasmic	423	430	0.76
Transmembrane Helix	431	447	0.89
Cytoplasmic	448	458	0.74
Transmembrane Helix	459	478	0.94
Non-Cytoplasmic	479	497	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMRHQTGRR RRQPSESSNG SLASRRSSFA QNGNSSRKSS ELRGPCEKVV HTAQDSLFST  60
   61 SSGWTNFRGF FNLSILLLVL SNGRVALENV IKYGILITPL QWMSTFVEHN YSIWSWPNLA 120
  121 LILCSNIQIV LVLGVEKVLE RGWLGNAFAA VFYTVLVIVH LTIPVVVTLT HTWKNPLWSV 180
  181 GMMGVYVIEA LKFISYGHVN YWARDARRKI TELKTQVTDL AKKTCDPKQF WDLKDELSMH 240
  241 QMAAAYPSNL SFSNIYYFMA APTLCYEFKF PRTLRIRKHF LIKRTVELIF LSFLIAALVQ 300
  301 QWVVPTVRNS MKPLSEMEYS RCLERLLKLA IPNHLIWLLF FYTFFHSFLN LVAELLRFAD 360
  361 REFYRDFWNS ETISYFWKSW NIPVHRFAVR HIYSPMMRNN FTKMSAFFVV FFVSAFFHEY 420
  421 LVSVPLKMFR LWSYYGMMGQ IPLSYITDKI VRGGRTGNII VWLSLIVGQP LAILMYGHDW 480
  481 YILNFGVPSA TNQTVII