YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39591873, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRPLIFVVL LTAQICLHVV LCQDEDSHIN TALLSSVLDR LTNRTTYDKR LRPRYGEKPV  60
   61 DVGITIHVSS ISAVSEVDMD FTLDFYMRQT WQDPRLAFGS LDLGLSKEID SLTVGVDYLD 120
  121 KLWKPDTFFP NEKKSFFHLA TTHNSFLRID SDGTVYTSQR LTVTATCPMD LKLFPMDSQH 180
  181 CKLEIESYAY STAEIEYNWC TSKEPNCASA VKADANIELS SYQFTKICQK RTLASTSSGT 240
  241 YSRLRVSFIF DRDSGFYFLQ IFFPASLVVV LSWISFWINR DSAPSRTLIG TMTVLTETHL 300
  301 MTGTNRRLPP VAYVKAVDVF LGFCYLLVIL ALIEYACVAY SKKKNEDRRR REKKMEHKPA 360
  361 PPTPDILHDI RLAECTCNAA PTSIIAVIKQ PNRFCVSHSH IDIVSRAAFP IVFIVFNIVF 420
  421 WLMLLYKSKR LPYISEHEGD RCDAPELH

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	255	0.99
Transmembrane Helix	256	277	0.94
Cytoplasmic	278	286	0.81
Transmembrane Helix	287	303	0.54
Non-Cytoplasmic	304	318	0.50
Transmembrane Helix	319	341	0.79
Cytoplasmic	342	402	0.58
Transmembrane Helix	403	425	0.87
Non-Cytoplasmic	426	448	0.55