YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187025293, gi...
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRNQILIIA LFLIPVYWCI DVILISSIEV RNDVGSIDCT NSKLMINNQN FTPICEVGYD  60
   61 NTKSISYITL AYNASNSVQE GNTTYHLDTK VTVPNGNKTK TDDYQYTGVF VVDKTVQPNT 120
  121 VAVGYLTLEK FIPATTAAPP TTKPKKREAG FPQEQLDAEP TAPVSNKTSL TINYIRLKYE 180
  181 ETSKQSNSNG GAVAVAIIEG IALIAILAYM GYRTMVKHRM KESSVNAAMY GFDNNSRNSI 240
  241 RMNDIPPPRD PTYATPPPAP FSQQPPARNT VMTTQELVVP QTSASVTRPT TTSNTTSNTT 300
  301 NGQFNDPFDS LDSW

Type	Start	End	Confidence
Cytoplasmic	1	6	0.49
Transmembrane Helix	7	25	0.52
Non-Cytoplasmic	26	189	0.98
Transmembrane Helix	190	212	0.90
Cytoplasmic	213	314	0.96