YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39591661, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLWFGGNPSP SDYPNAAIPN FNMHAFVIFS VFLIPFIAYL LILPGVRRKR VITTVTYVLM  60
   61 LVVGASLIAS LILPCWASGN QMIYTQFRGH SNERILAKIG VEIGLQKVNV TLKFERLLSS 120
  121 SDVLPGSDMT ELYYNEGFDI SGISSMAEAL HHGLENGLPY PMLSVLEYFS LNQDAFDWGR 180
  181 HYRVAGHYTN AAVWFAFACW CLSVVLLFLL PHNAYKSILA TGISCLIACL VYLLLSPCEL 240
  241 RIAFTGENFE RVDLTATFSF CFYLIFAMGI LCVLCGLGLG VCEHWRIYTL STFLDASLDE 300
  301 HVGPKWKKLP TGGPSLQGVQ IGTYRTNTTN SSRDKSSLTS DKTAGSSGFQ SRTSTCQSSA 360
  361 SSASLRSQTS IETVHDEAEL DKAHVHFLQD PCSSSSL

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.96
Transmembrane Helix	21	43	0.95
Cytoplasmic	44	53	0.84
Transmembrane Helix	54	77	0.89
Non-Cytoplasmic	78	190	0.93
Transmembrane Helix	191	210	0.95
Cytoplasmic	211	217	0.75
Transmembrane Helix	218	236	0.94
Non-Cytoplasmic	237	258	0.74
Transmembrane Helix	259	281	0.91
Cytoplasmic	282	397	0.90