YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39591546, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	67	0.87
Transmembrane Helix	68	87	0.91
Non-Cytoplasmic	88	105	0.73
Transmembrane Helix	106	131	0.78
Cytoplasmic	132	141	0.70
Transmembrane Helix	142	162	0.64
Non-Cytoplasmic	163	167	0.42
Transmembrane Helix	168	187	0.96
Cytoplasmic	188	197	0.41
Transmembrane Helix	198	217	0.91
Non-Cytoplasmic	218	234	0.45
Transmembrane Helix	235	267	0.75
Cytoplasmic	268	277	0.50
Transmembrane Helix	278	295	0.81
Non-Cytoplasmic	296	303	0.64
Transmembrane Helix	304	325	0.90
Cytoplasmic	326	332	0.63
Transmembrane Helix	333	352	0.84
Non-Cytoplasmic	353	357	0.67
Transmembrane Helix	358	377	0.94
Cytoplasmic	378	404	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSIRPMELE KTPYTHEEPL TCGGKVKRWC KKYLLEGQHL DEDQAYKLTN LPENPTFGDF  60
   61 IFIKYRKFVA MLIPFLLIHT VWWSAAIRHN LFQYYHDYWH MPVTMALGSF VGGMTSEGSG 120
  121 AVAFPVMTLA LHIKPEIARD FSLMIQSIGM TSALVCVLFM RVKFEHRAVI IGCLGAVPGF 180
  181 IVGVHWIDPL FSGPQKKMLF VSIWTAFAFA LGILNAQKKR STFREIPEFC AWKGWVLFFT 240
  241 GIIGGIFDAF AGSGIDICIF SVITLLFRVT EKTATPTTVV LKGTIAVFGF YYRAVMMGDI 300
  301 DIMAWRYFAV SVPVSAATGP IGSFLGSHLH RQVVAGFVYV LEAIALVGFL FTRPAWQLIA 360
  361 VGGCIILGGF VFFSALSKAG SILMNRIEAR QQKEAQKNGI TSAY