YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187023237, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRELASRVIL GLFSVNNAGF NAMSAILMIV EAVLSHLVIL KVKYTEIDWS TYMQQVECYT  60
   61 NKGILNYTRI GGDTGPIVYP GGHLFTYRIL YFLTSSGKNI RLAQHIFQVF YLFNVYMVFR 120
  121 ILKKTKRIPP IVLLFVTVTG YRIHSIFMLR LFNDPLAMML FYVAMDRFLH QKWIVGCVFY 180
  181 SFAVSIKMNV LLFAPALFFT LILNNYFMPT MGYLSLCALI QLYVGGPFLL HDWKSYVQRS 240
  241 FDLGRVFMFK WTVNWRFLPE DLFLDKRFHM ALLVGHITFL AIFAYYMWFR RLNGLRLSLY 300
  301 LRAFDGILTS TGPTDTFYAF CTSNLIGIAF SRSLHYQFYS WYFHQLPFLL FCDYPHVNSI 360
  361 SKIPWKQFFW KVPLLLAIEL CWNVYPSTWW SSALLHICHV IIFWHLISTR VQRPIDTVSW 420
  421 RTFDKIHEEQ EMLKNLVEEH DQVIPPTELP DFVEDDDQEK IKEYRMSRMP ERREKSKKEL 480
  481 EKGFQKYYRE QMADGYFQDD FRVYVSS

Type	Start	End	Confidence
Cytoplasmic	1	8	0.82
Transmembrane Helix	9	39	0.68
Non-Cytoplasmic	40	101	0.79
Transmembrane Helix	102	119	0.75
Cytoplasmic	120	130	0.73
Transmembrane Helix	131	152	0.83
Non-Cytoplasmic	153	172	0.77
Transmembrane Helix	173	203	0.70
Cytoplasmic	204	205	0.52
Transmembrane Helix	206	230	0.77
Non-Cytoplasmic	231	267	0.88
Transmembrane Helix	268	289	0.93
Cytoplasmic	290	315	0.72
Transmembrane Helix	316	331	0.61
Non-Cytoplasmic	332	388	0.48
Transmembrane Helix	389	407	0.85
Cytoplasmic	408	507	0.84