YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187023205, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIKIINPSN DPYFICLPVY FYTESDSIAK LISFIELILY TFCFYTLSIK LQIYLKFRIF  60
   61 HRNFVILSVP IFGLWYEAIL AKLITMAYQL KFLSPGYEIG EHVAMWTQNP KKMLILNSLD 120
  121 GLELLLVAGF LEWHYIFSMI FGSLSVCIER VLASMWIKHY EKNKKLYIPI SLTLVTQCLT 180
  181 IAVSFTMFYN HVNIIAANLI WIITCILASI MYFYIKRINE KWLAEMEDPR RKITFTVSQR 240
  241 FQVRENLRAI GFGKRIVYTV MFSLAVIGFG ILALFYEIVS PFLLHIGENL MFWNPFGICT 300
  301 VAMFSIPAWK KRYKNAFPTC CQWRLRPSRV DVESMEPMEE FNKRISIETD MYFNQLNESW 360
  361 I

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.79
Transmembrane Helix	28	49	0.76
Cytoplasmic	50	58	0.89
Transmembrane Helix	59	80	0.85
Non-Cytoplasmic	81	132	0.89
Transmembrane Helix	133	153	0.88
Cytoplasmic	154	165	0.91
Transmembrane Helix	166	188	0.92
Non-Cytoplasmic	189	193	0.87
Transmembrane Helix	194	215	0.94
Cytoplasmic	216	255	0.98
Transmembrane Helix	256	276	0.94
Non-Cytoplasmic	277	289	0.76
Transmembrane Helix	290	309	0.91
Cytoplasmic	310	361	0.99