YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187023180, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWVPDEWSI DHDTLIDAGG YVQKLKLYPY FDAAHYILTC ISVRQDLGIE GISFSRKHPF  60
   61 SCWLSCMLMS FAGSFLSCFL LGEPIISPLK QHNDVILGSI VWYLIFYSPF DIVFKLANWF 120
  121 PVKIVLSVLK EIQRTHKIAA GVKHAGRIYP ESYLVQILVG VAKGAGSGVV KIVEQLARGT 180
  181 WIPTNHEILR PSFTTKACVI ASLVFTLERH SMYVTAPHDL VYLCVVGFFI YFKLASLCLA 240
  241 VHDVLMPIEN VLCAVFMGGI IDAFAKYVFN FFIFSNFYIC FYKYESTYLP TRYISFRAVD 300
  301 ATKQAIHSNR GMSEEEILAN EKEKMLKKKK AALQQQMSNG ADKKNN

Type	Start	End	Confidence
Cytoplasmic	1	59	0.96
Transmembrane Helix	60	82	0.90
Non-Cytoplasmic	83	94	0.79
Transmembrane Helix	95	117	0.76
Cytoplasmic	118	218	0.79
Transmembrane Helix	219	241	0.81
Non-Cytoplasmic	242	250	0.51
Transmembrane Helix	251	282	0.57
Cytoplasmic	283	346	0.72