YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187037767, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSCRDPAYG PSMQGSKIER EGEKEGWKSG KKESAADPAP VLPRVADCGP PMFSSPLYLS  60
   61 LASVFSLIGL GLVCLAVVTD NWVEVQVNRR EIINSFKREP ELSLRLQNAF GHNLIYFSRN 120
  121 FGLFNLCFPD TVPQDIGSFN KVGSICIWNN EFMVPDSKKE HFTTNELYRH YAAKATIVAY 180
  181 VVGIVFVVLS FIMGLIGCWN RSKKFVVGTG IMLILAGLFM SVAMLLWHYV AYSERYTLDM 240
  241 EPYYKSWEPV LKLTSRHNYG WSYIVSWIGI GCIVIASAFY FFAYAAVKKE EDEALTAKHG 300
  301 AYMMPNYYDK GAGAGAIVPY NYNTYAGYGN YPYYNQYNTA GYYGYMTYGR

Type	Start	End	Confidence
Cytoplasmic	1	56	0.82
Transmembrane Helix	57	79	0.89
Non-Cytoplasmic	80	176	0.89
Transmembrane Helix	177	199	0.92
Cytoplasmic	200	205	0.88
Transmembrane Helix	206	230	0.89
Non-Cytoplasmic	231	262	0.93
Transmembrane Helix	263	284	0.93
Cytoplasmic	285	350	0.93