YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157767996
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	190	0.99
Transmembrane Helix	191	213	0.91
Cytoplasmic	214	261	0.94
Transmembrane Helix	262	282	0.91
Non-Cytoplasmic	283	300	0.89
Transmembrane Helix	301	324	0.91
Cytoplasmic	325	346	0.93
Transmembrane Helix	347	368	0.91
Non-Cytoplasmic	369	414	0.95
Transmembrane Helix	415	435	0.84
Cytoplasmic	436	440	0.64
Transmembrane Helix	441	464	0.86
Non-Cytoplasmic	465	483	0.91
Transmembrane Helix	484	504	0.89
Cytoplasmic	505	511	0.86
Transmembrane Helix	512	534	0.93
Non-Cytoplasmic	535	554	0.92
Transmembrane Helix	555	574	0.92
Cytoplasmic	575	593	0.78
Transmembrane Helix	594	615	0.84
Non-Cytoplasmic	616	625	0.80
Transmembrane Helix	626	646	0.93
Cytoplasmic	647	705	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISLLSLATL LLCTSSVYSS DWKDVFKPKP LHDLSNQCLN DTTTWIESLA IFATVSEGCL  60
   61 AKQNCSTKEL KILENNLYAI QELDAFGKFP VPGMLEAATL YDGSYQECNR VSGKKYDTNY 120
  121 CYLVLTPGKN ASCSSTSGGL LSMLPIRIAV CLPESCDHQD MVNIFNQLSP YPFTACSAYC 180
  181 AKFEVEKDTP FWGFTIFMIV MIVIALAATT LDYIRDTVYG LKSDKERNLL FKILLSFSFW 240
  241 TNAELLLSVK EQKPGFIKSL DCIRLFSMCW VVTGHSFIYL IFSDTFMPVI DFPKHFWNHL 300
  301 LLNAFVSVDT FFVLSGIVVT YLFFKTKPKK RMVANPVTWI MFYVHRYLRL TPPIMLFIGF 360
  361 FTVYAPYIQG SFSASQMNQL AAQAESCKTN WWQNLIYINN FPQDMTCYAP TWYLAADTQL 420
  421 YLVAPIVLIG LYFSFAAGTG LIVAGCVGSI ITTYIVFGIY GLSADMFGNG DVQDFFTIAY 480
  481 NKPWIRCPPY LVGMLTGYLL GVYGNRKIRL NWAVCVAAWL VAFVIAAFCL FATYDYDKGS 540
  541 HWSVFTRATF YNFHRLGWGI FICWVVAANH MGWGGPISNF MSHPMWQPFG RLSYCAYIVH 600
  601 WVVLFYFLNV GGHPIHYYSA WEVFTYTSIP ATLLSYIFAF FWSCFFEIPT LKLEKMLIEA 660
  661 ILGTGRTSAK LEPVGETGKV TPILEKKVEE NSWIEEIKED ENTKV