YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157767928
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	84	0.78
Transmembrane Helix	85	103	0.76
Non-Cytoplasmic	104	115	0.57
Transmembrane Helix	116	138	0.85
Cytoplasmic	139	145	0.53
Transmembrane Helix	146	167	0.89
Non-Cytoplasmic	168	206	0.59
Transmembrane Helix	207	228	0.51
Cytoplasmic	229	232	0.56
Transmembrane Helix	233	253	0.74
Non-Cytoplasmic	254	262	0.79
Transmembrane Helix	263	283	0.92
Cytoplasmic	284	332	0.95
Transmembrane Helix	333	353	0.89
Non-Cytoplasmic	354	364	0.79
Transmembrane Helix	365	386	0.93
Cytoplasmic	387	399	0.87
Transmembrane Helix	400	420	0.95
Non-Cytoplasmic	421	429	0.73
Transmembrane Helix	430	450	0.95
Cytoplasmic	451	501	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDDTLPDDS MTPRRRKIRP EPSQLHPEDR IGDAATTEGE LDEEDESERR VRRNKSRRQL  60
   61 ERTHFQMVNE RVVEDITVDF LYKPHTLTIL GVLVVFISYK AFTGFTEAQN ATDRNVYDGL 120
  121 LGTLALFLVV SAMAFPNGPF IRPHPVFWRI VFGVSVVYLM LLQFTLFQTY TDVKNVLTWL 180
  181 DPKGLGQEDL VEKEYAINCS DVSLERIWSH MDIFAVGHFT GWAMKALLIR HGVLCWYISI 240
  241 AWELTEIVFT QLLPNFAECW WDAIILDVLI CNGLGIFAGL QVCKWLSMRN YHWESIKNIT 300
  301 SHRARFKRMV MQFTPENMDD FDWGSFTQTI KRTMAVYVFV LIWLLTELNT FFMKHVFSVD 360
  361 TKHPVVFWRL ILIAFISAPS IRQFYLYATD PLIKRLGMQC WVYLAVCALE AAICVKFGIH 420
  421 MFPRVAVTPI VVWILFLIVG TFFCVWISVW WAKKSSATTE ITIDGENCDI YLDSSHENLG 480
  481 AIHDDVRRRR RDLGFSESDL N