YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39590727, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRRHRRSKV TRVVNLVKKI IAFFFSHIGL CALVVGYALL GAVIFKAVEG PHEAEIQAQV  60
   61 KAARERAVDV VWNATFRVNR LDSKQWKNTV LDEVKVFKTV CMQSIRKGYD GKEYGKQAQW 120
  121 TFTGAFLYSL TVITTIGYGN TAAKTYIGKT LTMLYAIIGI PLMLLFLTNI GDVMAKIFRF 180
  181 LYAQSIRLKF RLILWHKKRK AAKIRRANSL VSRLTRGHRV KTDSSVDSFG LGAGADVEDL 240
  241 LTARVEMEQL EVRETAAAQL ESVTVPISLV VFTMLGYLGV GTTIFKVWEG WTFLESFYFC 300
  301 FISLTTIGFG DKFPSTSVSN TDEAQEKLVI TSIYLLFGMA LLAMCFNLAQ EEVQNKTRWI 360
  361 ADKFRSKDDD DD

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	41	0.98
Non-Cytoplasmic	42	119	0.96
Transmembrane Helix	120	142	0.80
Cytoplasmic	143	150	0.75
Transmembrane Helix	151	171	0.90
Non-Cytoplasmic	172	262	0.57
Transmembrane Helix	263	285	0.84
Cytoplasmic	286	290	0.45
Transmembrane Helix	291	310	0.81
Non-Cytoplasmic	311	327	0.60
Transmembrane Helix	328	349	0.90
Cytoplasmic	350	372	0.65