YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39590468, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSFYSAITL LFCLFSMTTA TGHLRLELTA SNYLELHVKT NISAQTVFLN MGVTRIVSFH  60
   61 PKVDQESIEV TFSQRGGYSQ MNVYNLNAAG AMTQQTILFS DIVLMIQSVF ECDDGFIGEN 120
  121 CLEVSTTTTT TTTSSTTTTT EGPTTTTAPR TTSSKKSPEM PTASAFTASF STDTIICITF 180
  181 SIFIVVLLIL IVTLYLRRRQ QSIYIQPHTP AKKTYIDPED SGIYSPESNR YTGSPHLQC

Type	Start	End	Confidence
Signal Peptide	1	22	0.97
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	173	0.99
Transmembrane Helix	174	196	0.92
Cytoplasmic	197	239	0.99