YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157759970
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQCGSIRTL VCKTEDNYNI YDDELDSLES LKKPRKKLIF STIALILALG SLLITVYLLT  60
   61 RDTSPKATYD RINDDKLRDL IVVSPAAQKL PKTGKLFCWV QTSTIYHDTR SLAINETWIH 120
  121 RCDHGQLFTS EKFNDTRIPY STVFAGIPDN YYNLFFKSRY AFRHIYTNIS SEFDWYLKAD 180
  181 DDTYVIVENL KAFLSTLNPE EPHYLGYVLK PYLKNGYNAG GAGYILSRAA LKIFAEKLYP 240
  241 NATLCPDDIY EDVGIARCLA NAGIYPEDTR NSHGQNRFNT FSPTETFHQT KASVDWVKFL 300
  301 EKKGYAAFAN DLVSFHHLSP DEIRLFDILL YRVDRKQV

Type	Start	End	Confidence
Cytoplasmic	1	37	0.98
Transmembrane Helix	38	59	0.94
Non-Cytoplasmic	60	338	0.99