YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157760004
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSITWALAV LLVTPAASYF IHVDANEEQC FFDRLTSGTK MGLMFEVAEG GFLDIDVKIT  60
   61 GPDNKEIYKG ERESSGKFTF AAHMDGIYTY CFGNKMSTMT PKAVMFTVEI TEPHQQAPGA 120
  121 AASQDAADNA KLEEMVRELS SALMSVKHEQ EYMEVRERVH RNINENTNSR VVMWAAFEAF 180
  181 VLVGMTIGQV FYLKRFFEVR TMV

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	170	0.99
Transmembrane Helix	171	193	0.85
Cytoplasmic	194	203	0.88