YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157750406
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGILEVYDA KRTDNLIITL EGISGSETIK AIKKRIAQKK LKLTEERQAL RVEPKGKPLG  60
   61 DDQKLSDLGL SSQKAVLYVR DLGPQIAWKT VFMAEYAGPL FVYPLFYLRP TFIYGEAANN 120
  121 AQMHPAVQFA FLAWSFHYAK RLFETQFIHR FGNSTMPQFN LVKNCSYYWG FAAFVAYFVN 180
  181 HPLFTPPAFG DFQMYLGLVG FVISEFGNLS IHILLRNLRP AGTRERRIPK PDGNPLSLLF 240
  241 NYVSCPNYTY EVSSWIFFTI MVQSLPALLF TIAGFVQMTI WAQGKHRNYL KEFPDYPKNR 300
  301 KAIVPFVL

Type	Start	End	Confidence
Cytoplasmic	1	89	0.95
Transmembrane Helix	90	107	0.64
Non-Cytoplasmic	108	120	0.58
Transmembrane Helix	121	139	0.62
Cytoplasmic	140	164	0.83
Transmembrane Helix	165	184	0.87
Non-Cytoplasmic	185	193	0.83
Transmembrane Helix	194	215	0.89
Cytoplasmic	216	235	0.82
Transmembrane Helix	236	250	0.58
Non-Cytoplasmic	251	255	0.43
Transmembrane Helix	256	281	0.79
Cytoplasmic	282	308	0.67