YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187030497, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKLDFSSGG DEEEDKDLTK EFVMDETPME EEATTQAVKQ VATTTKETYK DAVVNKVIDV  60
   61 KDVVKEKVMQ QTGMPEWAFV FLGIVFIFFV LACAFFIIRK LFGKKRHGEK NKKGGLKGFF 120
  121 GKGQDVVDGK NIQGMAQDLE ELGDAMEQNE KAQAEEKEEV KLGRIQYKLD YDFQQGQLTV 180
  181 TVIQAEDLPG MDMSGTSDPY VKLYLLPEKK KKVETKVHRK TLNPVFNETF IFKVAFNEIT 240
  241 AKTLVFAIYD FDRFSKHDQI GQVLIPLGKI DLGQVIEEWK DIAPPPDDKE AEKSLGDICF 300
  301 SLRYVPTAGK LTVVVLEAKN LKKMDVGGLS DPYVKIVLMQ GGKRLKKKKT SIKKCTLNPY 360
  361 YNESFSFEVP FEQIQKVSLM ITVMDYDKLG SNDAIGRCLL GCNGTGAELR HWMDMLASPR 420
  421 RPIAQWHTLG PVEEEGDKKD EKK

Type	Start	End	Confidence
Non-Cytoplasmic	1	76	0.52
Transmembrane Helix	77	98	0.94
Cytoplasmic	99	443	0.51