YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ENSPTRT00000030855
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.32
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHVRHFRTL VSGFYFWEAA LLLSLVATKE TDSARSRSAP MSPSDFLDKL MGRTSGYDAR  60
   61 IRPNFKGPPV NVTCNIFINS FGSIAETTMD YRVNIFLRQK WNDPRLAYSE YPDDSLDLDP 120
  121 SMLDSIWKPD LFFANEKGAN FHEVTTDNKL LRIFKNGNVL YSIRLTLTLS CPMDLKNFPM 180
  181 DVQTCIMQLE SFGYTMNDLI FEWQDEAPVQ VAEGLTLPQF LLKEEKDLRY CTKHYNTGKF 240
  241 TCIEVRFHLE RQMGYYLIQM YIPSLLIVIL SWVSFWINMD AAPARVALGI TTVLTMTTQS 300
  301 SGSRASLPKV SYVKAIDIWM AVCLLFVFSA LLEYAAVNFV SRQHKELLRF RRKRKNKDDE 360
  361 VRESRFSFTA YGMGPCLQAK DGMTPKGPNH PVQVMPKSPD EMRKVFIDRA KKIDTISRAC 420
  421 FPLAFLIFNI FYWVIYKILR HEDIHQQQD

Type	Start	End	Confidence
Signal Peptide	1	27	0.31
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	254	0.56
Transmembrane Helix	255	276	0.92
Cytoplasmic	277	283	0.46
Transmembrane Helix	284	302	0.60
Non-Cytoplasmic	303	317	0.70
Transmembrane Helix	318	340	0.89
Cytoplasmic	341	415	0.84
Transmembrane Helix	416	436	0.82
Non-Cytoplasmic	437	449	0.82