YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39590084, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADFWTILLF VLAVFLVFYN FSTKFHYYVR ISFFYITILL HGMEVCVTMI PSWLGSKGAD  60
   61 YVFHSFYYWS KWTGIHTTVY NYEITQVDGP AIVICNHQSS LDIVSMSSVW PKHCAVMMKR 120
  121 ILAYVPFFNL GAYFSSTIFI DRFNRERAMA SVDYCATEMK KRNLKLWVFP EGTRNRDGGF 180
  181 IPFKKGAFNI AVRAQLPIIP VVFSDYRSFY SKPGRYFKND GEVVIRVLDP IPTEGLTLDD 240
  241 VNELSDKCRD LMLVAYREVT AEAWKRTAER RGEPVDGKKI D

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.70
Transmembrane Helix	5	23	0.92
Cytoplasmic	24	32	0.60
Transmembrane Helix	33	55	0.86
Non-Cytoplasmic	56	119	0.71
Transmembrane Helix	120	140	0.77
Cytoplasmic	141	281	0.65