YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157765170
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	88	0.94
Transmembrane Helix	89	114	0.78
Non-Cytoplasmic	115	125	0.70
Transmembrane Helix	126	143	0.73
Cytoplasmic	144	185	0.70
Transmembrane Helix	186	209	0.82
Non-Cytoplasmic	210	228	0.61
Transmembrane Helix	229	250	0.93
Cytoplasmic	251	257	0.54
Transmembrane Helix	258	279	0.92
Non-Cytoplasmic	280	289	0.56
Transmembrane Helix	290	313	0.87
Cytoplasmic	314	319	0.61
Transmembrane Helix	320	345	0.67
Non-Cytoplasmic	346	353	0.51
Transmembrane Helix	354	372	0.68
Cytoplasmic	373	383	0.49
Transmembrane Helix	384	404	0.62
Non-Cytoplasmic	405	424	0.44

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTTRSRSKN NRATDKDRSK ERYAYRPRST FEESDALVGC KTIDHYLQYD CLLTREELQR  60
   61 LDEHVYSAVD TSWLDELCMK KFWEAVVIYY PLWVAPNLLT LIGLIVNLTT VLVLSFYCPT 120
  121 ATETAPSWTY FLAAAGLFAY QTLDATDGKQ ARRIGASSPL GELFDHGCDS ASQVFVTLNV 180
  181 CYALQLGTVR CGVFIACLIS VSLFYTAHWS TYCTGQLRFA RFDVTEAQWS IISMLLCTAV 240
  241 FGPGIWSIGV FGYSLKHLLL AAVALGTIYQ ALGYLAVIFT EGVGKNGSTV AGTSVLFPIC 300
  301 PLLAVIVPYC MIYSKSASSV YDDLIVIFVL QFGAVAAKAT NRLIVAHMSR SELSLWDWIY 360
  361 MGPIALMINQ YYDIKIDEPR LLKYTTVYVY LSLLVYCLFI TRQICDHMGI YCFKVTTPQR 420
  421 AANK