YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157765132
Protein type:	Globular with Signal Peptide
Type Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKFPVPLRT IGGLRPSATA AISAANIGFT QSSRALNTST KSSALVGQVA RQYPNAAAFS  60
   61 IKQVRLYSSN NLPKHNRVAL PALSPTMELG TVVSWQKKEG DQLSEGDLLC EIETDKATMG 120
  121 FETPEEGYLA KILIQEGSKD VPIGKLLCII VENEADVAAF KDFKDDGAAA GGDSSAKKES 180
  181 APEPPKQSSP PAASSPPTPM YQAPSIPKSA PIPPPSSGRV SASPFAKKLA AEQGLDLSGV 240
  241 SGSGPGGRIL ASDLSQAPAK GATSTTSQAS SGQDYTDVPL SNMRKTIAKR LTESKSTIPH 300
  301 YYLTSEIQLD TLLQVREKLN GLLAKGTSGH ATKISINDFI IKASALACRR VPEANSYWMD 360
  361 SFIRENHHVD VSVAVSTAAG LITPIVFNAH AKGLATIASE VTELAQRARE GKLQPHEFQG 420
  421 GTFTVSNLGM FGSVSDFTAI INPPQSCILA IGGASDKLIP DEAEGYKKIK TMKVTLSCDH 480
  481 RTVDGAVGAV WLRHFKEFLE KPHTMLL

Type	Start	End	Confidence
Signal Peptide	1	32	0.69
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	507	0.98