YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39589810, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNEKDVKPL VVRIILIVGG ILGAHRLYLK QVPEAFVFFS TFGVFLIGWL YDSFMFKYEV  60
   61 EAYNQLINLN KENKDKEKWK NGRLQTAQSK FVEFSLTRFL YSVLYGLYIG IGTWLACTLT 120
  121 FGWTDINSIP FVSVVALGIT AGVYIIGHCG GQSRELSFIW ISSFSSMFLM FWSSLFMMLV 180
  181 CVILLGCSRK IGEKQITATR PGSFRETTSV GSLMRDRIFD SKKVYSFFEG NPIIEYSISD 240
  241 SSQTERSTAS KKSNSFWQHV WSGELFDELT GAAHLTKIDW VELTMTFIVD VLRAEARVIN 300
  301 KSSTVEPFKW ALWRNYLIHR FSLDPLVSDD HIRSECKKWQ QEQNQKRESS EKDFSMIAAK 360
  361 RGCATFQS

Type	Start	End	Confidence
Cytoplasmic	1	9	0.87
Transmembrane Helix	10	29	0.89
Non-Cytoplasmic	30	34	0.79
Transmembrane Helix	35	55	0.88
Cytoplasmic	56	98	0.83
Transmembrane Helix	99	122	0.86
Non-Cytoplasmic	123	128	0.67
Transmembrane Helix	129	150	0.88
Cytoplasmic	151	163	0.66
Transmembrane Helix	164	187	0.85
Non-Cytoplasmic	188	368	0.81