YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39589767, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYAVIVIGS WLMTTCGIFV FLTLSNTGKP AEYGRYSNPS PSKSMIPAKL AWMTQESPAF  60
   61 FIPFYFYWTD QHLTEYGKFL TCVFLFYYAY RTFAYPLLIR SKNETPFEIV LMKFLFCIFN 120
  121 GFIQGSWNAY YQPEIDKFHP RFFVFFGIWL FVIGFIIHCI SDLHLISFRY NLPNDTYSIP 180
  181 RGHLFEYISC PNYFGECLQW IGYAISTRSF PAIAFAFFVV CNIAPRAASH HECYKKKFGA 240
  241 QYPNDRMALL PGLW

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.60
Transmembrane Helix	7	27	0.91
Cytoplasmic	28	47	0.66
Transmembrane Helix	48	68	0.68
Non-Cytoplasmic	69	75	0.63
Transmembrane Helix	76	95	0.73
Cytoplasmic	96	108	0.62
Transmembrane Helix	109	131	0.78
Non-Cytoplasmic	132	141	0.51
Transmembrane Helix	142	161	0.93
Cytoplasmic	162	254	0.58