YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39589685, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLKWSILAM LLVACVVAVA ENKSAYAQAA DNFLDELSGK EVEALSLTQE AQKHDGHDHG  60
   61 NHGVHGAHGG HEGHMMKMWF HGGFEEVILF DFWRTDSLFG MLLSCAAIFI MGATYEGVKW 120
  121 FRVFLQMNQS QSQVLVNKSC VETTRSSGGT CHQSISRSQS NKPQSEPFLA SPITRNPSNS 180
  181 PFSPHRLIQM VLYILQLVLA YWLMLIVMTY NTYLTAAVVL GAGFGHWLFA VLQLRSSDGE 240
  241 VTDSFQTDAC H

Type	Start	End	Confidence
Signal Peptide	1	27	0.88
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	97	0.98
Transmembrane Helix	98	118	0.81
Cytoplasmic	119	186	0.84
Transmembrane Helix	187	206	0.88
Non-Cytoplasmic	207	211	0.63
Transmembrane Helix	212	231	0.89
Cytoplasmic	232	251	0.76