YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187029722, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTRFSGKVV LVTGSSNGIG RATAILFAKE GAKVTITGRN AQRLEETKQE ILKAGIPEDH  60
   61 VLAIVTDLAT EEGQDKLINE TIKKFGKLDI LVNNAGAAFN DAEAKTGVDQ NVSIYDKIMQ 120
  121 INLRSVVTLT QKAKKYLVEA KGEIVNVSSI AAGPQAYPAL PYYAMSKSAL DQYTRSAAID 180
  181 LIQYGVRVNS VSPGAVATGF RQAMGMPAET YEKYTQFLQS HKECIPYGSI GQPIDIAHII 240
  241 AFLGDRKLSS YIIGQTIVAD GGSTLVMGMQ AHNMMDILKS

Type	Start	End	Confidence
Signal Peptide	1	22	0.56
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	280	0.94