YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157745337
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSGLRKQF NKANQYLSET MGAAEPTKLD DVFNDMEKNI DTTYNLITDL VAGTNEYLQP  60
   61 NPATRAKMAT QVALSKVRGT TKTSPYPQTE GMLAEVMQKY GQQLGDGSDL GKALNDAAEG 120
  121 YRQMADIKYQ MEDNVKQNFL DPLMHLQNNE LKDVNHHRTK LKGRRLDYDC KKRQQRRDDE 180
  181 MIQAEEKLEE SKRLAEMSMF NVLSNDVEQI SQLRALIEAQ LDFHRQTAQC LENLQQQLGH 240
  241 RIKDAASRPR EEHVPLPVLG NESRTPRSRF VQKHGLSCES CIILFCFLHA SSLFLYIAFS 300
  301 FRSPAPSEMT HNSVQPATVR FLILLSDGKI RNSISISNEH SIFENAFITN SPQNGGGMPS 360
  361 QAPPAYQGGP PPGGLPPPLS QQQKPQCRAL FDFDAQSEGE LDFKEGTIIE LVSQIDENWY 420
  421 EGRFNGKTGL FPVTYVQVLV PLK

Type	Start	End	Confidence
Cytoplasmic	1	275	0.67
Transmembrane Helix	276	299	0.75
Non-Cytoplasmic	300	443	0.83