YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39589333, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCCSKKQSK QAIRVSLIIS VLVDVCLCAA LFVSLAYYWI NGKSFSPHYI VGFMAFFVLF  60
   61 AGFFISLMVA VHTKDIRAIL VSVAFTVARF ICAIIVVISW MSEYHSTEEA NKAAKEGEDP 120
  121 YEWISHRKAI LLAFAGIYIK IFISQLFILN RYYSHAAETE REAKEREIDM EF

Type	Start	End	Confidence
Cytoplasmic	1	15	0.94
Transmembrane Helix	16	40	0.88
Non-Cytoplasmic	41	48	0.85
Transmembrane Helix	49	71	0.91
Cytoplasmic	72	77	0.91
Transmembrane Helix	78	100	0.91
Non-Cytoplasmic	101	128	0.94
Transmembrane Helix	129	149	0.87
Cytoplasmic	150	172	0.89