YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39589161, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	104	0.98
Transmembrane Helix	105	128	0.87
Non-Cytoplasmic	129	135	0.83
Transmembrane Helix	136	156	0.81
Cytoplasmic	157	171	0.78
Transmembrane Helix	172	190	0.90
Non-Cytoplasmic	191	200	0.78
Transmembrane Helix	201	220	0.85
Cytoplasmic	221	232	0.60
Transmembrane Helix	233	254	0.77
Non-Cytoplasmic	255	286	0.87
Transmembrane Helix	287	307	0.92
Cytoplasmic	308	352	0.97
Transmembrane Helix	353	373	0.84
Non-Cytoplasmic	374	387	0.78
Transmembrane Helix	388	407	0.93
Cytoplasmic	408	417	0.79
Transmembrane Helix	418	440	0.88
Non-Cytoplasmic	441	461	0.84
Transmembrane Helix	462	481	0.91
Cytoplasmic	482	492	0.72
Transmembrane Helix	493	514	0.69
Non-Cytoplasmic	515	556	0.84
Transmembrane Helix	557	576	0.88
Cytoplasmic	577	598	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AMRETYIDID SEVETTAGLE RVRSRHKRRL PHTSEDVMAF EPDVDFSTAG GHFPRVFLRQ  60
   61 DDDGESSDGY GDEDLQHLLP DPNVDPNANW FKRTHATLKG DISSILLLLF LYLLQGVPLG 120
  121 LIGAIPLLLS SKHASYSSQA IFSFAYWPFS MKLLWAPIVD SVYSKRLGRR KSWMVPCQYL 180
  181 IGAFMLYLSF KVNDIMGENG GSPNVVFLML IFLPLNFLAA TQDIAVDGWA LTMLSNVGYA 240
  241 STCNAVGQTA GYFLGNVVFL ALESAPFCNE FLRSKDNQQD TGMVDLAGYV FFWGWVFIVT 300
  301 TTLVLILKRE VDMSISSNNT TASGDPAPED EELELGVVES YTVLYKIMKL KPVHYMIAIL 360
  361 LTGKLAFAAT DGMTSLKLIA MGIPKDRLAS IAVFLTPMQI LLPWMIGKWT AGPRPLNIFL 420
  421 LAFPYRIFIG GVFAALIWWT PHFQLPDGKF EYSVYFVWIS GYMFHQLATY SMFVSMMAFI 480
  481 AQISDPRIGG TYMTMLNTLN NLGGNWPVTV VLAVTDWFTY KDCVVKGSKD VLYACNTKVL 540
  541 ADQCAAGGDV CEVAIDGYFI SVAACSVIGV IWYKVFFNKL KYLQKIPRAQ WRVFPSRA