YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39589128, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRTRYRGSP VREKEEFACI NCQQPATNLY IKYSEEVTTL TDCDKCDKTV DKYIEQDVVL  60
   61 VVIDLMLQYV QAYRHLLLNV RIQRPERLFV MFWLSHAAEV WIRERENREE QTTMLADQEW 120
  121 MFYRCLLLSA VEISSFVFVI LLFWKLKKDE TVHTWRQMIS LTMLGYYGNV AVVLSFIFRL 180
  181 SHRLSYQIVM QIFLLVSHIQ VQRVLFPTVS DSNNIIVVLV AKTFSTITGA LFTQAVNDSF 240
  241 M

Type	Start	End	Confidence
Cytoplasmic	1	119	0.72
Transmembrane Helix	120	144	0.88
Non-Cytoplasmic	145	157	0.59
Transmembrane Helix	158	180	0.85
Cytoplasmic	181	187	0.51
Transmembrane Helix	188	206	0.48
Non-Cytoplasmic	207	214	0.40
Transmembrane Helix	215	236	0.60
Cytoplasmic	237	241	0.53