YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39588950, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLPGNCSTS AALCMQFLTQ LAAVAIDQAY PAVPNDYHLP NKKLFVSYRS VPPPAPSPSS  60
   61 AAVPIRFNSY SSVGSNIRGL NSQTLHPGSM EPPLTPGNYR LYSMRFCPYA QRVLIYLAKK 120
  121 NIPVEVVNVN PDRSPNWYLA KSPIGRVPAL EINGKVVWES NVIVEYLDEL FPTTTVLPRD 180
  181 AFEKAHQKIL VERLSPIMNA LFEFYSSMSN QQAQRQNDMN VHSALRNAEN LLRDSFYGGR 240
  241 QPGYADYLIW PFLERLQLLT MTQNSQFRYF PGLHYPKIGA YIARMQNQPE IKFSSRPLTH 300
  301 HKAYLDSFSM GMPNYDFGIY GKS

Type	Start	End	Confidence
Signal Peptide	1	25	0.91
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	323	0.99