YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7485901
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLVMRFDLY LMFVMLMGLG FTISNGYKFY VGGKDGWVPT PSEDYSHWSH RNRFQVNDTL  60
   61 HFKYAKGKDS VLEVTEQEYN TCNTTHPLTS LSDGDSLFLL SHSGSYFFIS GNSQNCLKGQ 120
  121 KLAVKVLSTV HHSHSPRHTS PSPSPVHQEL SSPGPSPGVE PSSDSNSRVP APGPATAPNS 180
  181 AGLVGPGMVV LVVNSIIKPI DSFLLKSLPL VVDVAVGIST SRQLQASEEP VSSPLSSPAL 240
  241 LGSGKEEEQK IIPKRQKVQA VLKSIKQSPK KVNLVAALVR GMRVEDALIQ LQVTVKRAAQ 300
  301 TVYRVIHAAR ANATHNHGLD PDRLLVAEAF VGKGLFGKKV AYHAKGRSGI ISIPRCRLTV 360
  361 IVRETTPEEE AEIARLKVHN FKKKSKRERQ LVPHKLIETS PIWNRRGTKA NHRSSELVLT 420
  421 IILDVTCVGN MEKNRLDNLT NQNNIYHHNP EETCSFRCNG SERIDVDADV VVVDVVELLV 480
  481 SENIEFNGED SAIGVTVIGE VEEAEMLR

Type	Start	End	Confidence
Cytoplasmic	1	8	0.56
Transmembrane Helix	9	27	0.67
Non-Cytoplasmic	28	508	0.88