YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39587631, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MICVHTQKKW KERLKKNIRN LRSVGFCADE YRFSFIIVFA IFFFGAYFLY QVQYKTGIDI  60
   61 IPLFPIDDSG FDKYNEHLLG SVKVSESAKN QPKSGSLLCW AMTTSVYHKT RVPAITETWL 120
  121 RRCDAGHLFT NSDRFLNAST PYHTVFDGLP ESYYKLFWKT RLALLYIYKH VSKDFDWYFK 180
  181 GDDDTYLIVE NLQRYLATLD PNKPYFIGYR LSRRTETGYN AGGSGYVMSR EAMRIFAEKL 240
  241 FNDKEKCPYH EWEDYAIAQC LASVGIVPLD SRDEKGRQRF LPWRPEQHFY ADLTRSFQMD 300
  301 PIQIWGPAIY HENLISMHHL YPDEIRLIDG LLYSIARGIW RQGDLEDIRN ETTTVSTSMD 360
  361 DTLPPPTI

Type	Start	End	Confidence
Cytoplasmic	1	30	0.86
Transmembrane Helix	31	50	0.88
Non-Cytoplasmic	51	368	0.95