YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157757929
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSCGDKCE TLEWLRERIH NKKHFTARFI GQIADASGMD AELIVKIFGG VLFVILVFSD  60
   61 HAHFFANQLL VLVPALLIFV FPAEKPTDDS LFIYFSLFGA LTVMDRSLER IPCYYIFKLA 120
  121 LFVLLYVPPY ELHKRISELI QEQLKKQKSN ENVSEISRSQ RTTPKTNQST RTALPPPPPQ 180
  181 PVQEQPKPVE QAPASAPEPV PVPVPVEQPP PPPPVEQAPP PPAPAPAPVA EAPQAQQEPP 240
  241 APADPEPKLP SSRSHSDLAG GSQRLKSGPN PMQSNSFYNL RSESNGFNSR AISPAGNLND 300
  301 MMFLPTGKLV FNAPFDYDNL TYHMKITNNS RHRIAYAVKG NAVPRVMANP AFGILNVEEM 360
  361 RIVAVSVQKF AWNDVDFQKD RIAFDYVLLP DDNKENTFQM SMFQQSDSKI RKNIKIEYNP 420
  421

Type	Start	End	Confidence
Cytoplasmic	1	42	0.79
Transmembrane Helix	43	65	0.67
Non-Cytoplasmic	66	89	0.49
Transmembrane Helix	90	104	0.56
Cytoplasmic	105	113	0.54
Transmembrane Helix	114	130	0.67
Non-Cytoplasmic	131	420	0.87