YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157757963
Protein type:	Transmembrane
Type Confidence:	0.55
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHSCDREPL LRQDDDSQED ILEMEDDFYE KPSQIRFVNK ERLVPKAVFL VIGVFSVIYG  60
   61 MDRYHISMKE IESRECSDAL DDCDHLPFNQ TVVPPFYNYL QDFTISPRYG ISLCLLPKVL 120
  121 STTGTATICY LEDPDKFAAD NRTISTETYI TRFCERNEMK SYNMVKHYLN DNFENIIVTR 180
  181 NPYDRFISGF TEKCVNDLED DYCHGCGADM RCFLQKEYRR LMRMSMLFPV YTVADTHFAP 240
  241 QTWYCDMRNT LKNSTIVRFS LQGIEKVKMI DDMLNVFRRR KVPERQLDEI REQLSLGKSH 300
  301 HTTTGSSLRE HYERLVREDE SIRRALHRIY YYDFLYLGYD M

Type	Start	End	Confidence
Cytoplasmic	1	42	0.52
Transmembrane Helix	43	61	0.51
Non-Cytoplasmic	62	341	0.96