YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|130489840, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.95
Transmembrane Helix	11	33	0.90
Non-Cytoplasmic	34	68	0.92
Transmembrane Helix	69	89	0.91
Cytoplasmic	90	97	0.78
Transmembrane Helix	98	116	0.96
Non-Cytoplasmic	117	125	0.78
Transmembrane Helix	126	148	0.86
Cytoplasmic	149	159	0.75
Transmembrane Helix	160	182	0.89
Non-Cytoplasmic	183	190	0.84
Transmembrane Helix	191	212	0.92
Cytoplasmic	213	289	0.97
Transmembrane Helix	290	313	0.90
Non-Cytoplasmic	314	326	0.81
Transmembrane Helix	327	344	0.89
Cytoplasmic	345	363	0.80
Transmembrane Helix	364	383	0.89
Non-Cytoplasmic	384	392	0.75
Transmembrane Helix	393	417	0.84
Cytoplasmic	418	429	0.85
Transmembrane Helix	430	452	0.92
Non-Cytoplasmic	453	456	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGDAPRDS YHLVGISFFI LGLGTLLPWN FFITAIPYFQ GRLAGANGTA GALSTNHTGP  60
   61 TDAFNFNNWV TLLSQLPLLL FTLLNSFLYQ CIPEAVRILG SLLAMLLLFA LTAALVKVDV 120
  121 SPGPFFSITM ASAWFINSFC AVLQGSLFGQ LGTMPSTYNT LFLSGQGLAG IFAALAMLTS 180
  181 MASGVDAQTS ALGYFLTPCV GIVLSIVCYL SLPHLEFARY YLAKKPSQAP TQELETKAEL 240
  241 LQCDEKNGVP SSPQKAALTS DVDPEKEPEL EPAEPRDPGK PSVFVVFRKI WLTALCLVLV 300
  301 FTVTLSVFPA ITAMVTSSTS PGKWSEFFNP ICCFLLFNVM DWLGRSLTSY FLWPVENSRL 360
  361 LPLLVRLRFL FVPLFMLCHV PQRARLPILF PQAANFIIFM LLFAVSNGYL VSLTMCLAPR 420
  421 QVLAHEREVA GALMTFFLAL GLSCGASLSF LFKALL