YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|147904836, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVATGDLTD EASALPGHPQ DSYDPEPDHE CCERVVINIS GLRFETQLKT LSQFPETLLG  60
   61 DPKKRMRYFD PLRNEYFFDR NRPSFDAILY FYQSGGRLRR PVNVPLDIFS EEIRFYELGE 120
  121 EAMEIFREDE GFIKEEERPL PDNEFQKQVW LLFEYPESSG PARIIAIISV TVILISIVSF 180
  181 CLETLPVFRD ENEDMHGSGG NYYSYPNSTV RFQKSNTFTD PFFIVETLCI IWFSFEFLVR 240
  241 FLACPSKAVF FTNLMNIIDI VAIIPYFITL GTELAEKTED GQQGQQAMSL AILRVIRLVR 300
  301 VFRIFKLSRH SKGLQILGQT LKASMRELGL LIFFLFIGVI LFSSAVFFAE ADERDSQFPS 360
  361 IPDAFWWAVV SMTTVGYGDM VPTTIGGKIV GSLCAIAGVL TIALPVPVIV SNFNYFYHRE 420
  421 TEGGEQAQYL QVTSCPKIPS SPDLQKSRSA STLSKSDYME IQEGVNHSNE DFREKNLKTA 480
  481 NCTLGNTNYV NITKMLTDV

Type	Start	End	Confidence
Cytoplasmic	1	163	0.90
Transmembrane Helix	164	186	0.83
Non-Cytoplasmic	187	221	0.89
Transmembrane Helix	222	242	0.88
Cytoplasmic	243	248	0.82
Transmembrane Helix	249	270	0.83
Non-Cytoplasmic	271	286	0.74
Transmembrane Helix	287	304	0.75
Cytoplasmic	305	327	0.86
Transmembrane Helix	328	349	0.94
Non-Cytoplasmic	350	363	0.81
Transmembrane Helix	364	381	0.77
Cytoplasmic	382	388	0.58
Transmembrane Helix	389	410	0.87
Non-Cytoplasmic	411	499	0.75