YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187021403, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSGASATTS SELKIEDLFH QKRNEDSITK IFSAIYAPVG IIIFLFRCFL GFHTFLVACL  60
   61 LRKSGVFRMH ALRTMCSILG IVVEKRGERD ETARVLCANH VSILDHLAID ILTPCLLPSV 120
  121 WDIPSVIRWC FGYVDLGAAR GRDHLVNGAK KLLAKETEMP LLAFPEGIIT SGEKALIKFN 180
  181 TWAFEVAPIV QPVSVRVWRP YPWKVAVSVL GATWWTDLFY FFALPFTVIS VEYLPKMEKK 240
  241 EEESLDEFTA RVAETLAANL KISVSKFGIS DASEAAKRLR TDQERARKVV NKEKTSPRLQ 300
  301 DARQMDECAM RIKQSFPTFH LSAIRRDLEK TRSQTATVNN LKAGKITVSA ADGQVGKVTL 360
  361 DASSWRGVFD NRKWQMIETN RQKYMDR

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.57
Transmembrane Helix	34	61	0.74
Cytoplasmic	62	204	0.62
Transmembrane Helix	205	224	0.55
Non-Cytoplasmic	225	387	0.75