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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|39587229, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.67
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPRKMRSPN ILILIVFWVA TSSGFPLEEK FEGLFRAEPP HCSKTPIVRA QTSQNAMSSI  60
   61 ARGMQMQFSI GLHTAVCFRL FEDTRLASTS MNGIGDDDAG NQTSLLHTIR LEKLEHHHPI 120
  121 TQRYIFGIPE VHASCICECD ATASTCTAES HQFTACPESD KSDESTACYR TFFPNQTPIG 180
  181 CSEDDSPKLC CDVRFKPYKN MTFLAVKLEQ PTTYATFVYA AYDFVNGYWV EKDKTTIRSQ 240
  241 LDGGTQDRHL DSKRRISLAV TAGGRASHQL ETGMYFSRTS NGGETEELRM QPLNEITDNN 300
  301 FDRLGWYRMD ESGHFHVNNG VVKMDDIHKA KVKNCKEQTY RSILAANNYM PGHFNLSRPL 360
  361 EVSKPWIQSA RIFDSSSRQA VVTHAEGTNL QISIHLDDEV ESQNLVFFHN ASRIREFSGS 420
  421 IIVDSKSNRL FNLTVYEASG KIDGSVKMST GFGSDTIHTF TAYVSDLHAA NRSMIIPLPA 480
  481 IVGPGARTIC LRADSMADID SICHVVEYFE SPLEIDLVEG KWHEMIGTCP TCNQINFNGM 540
  541 MKFLNPAHWI KGISSIGDGV MIATDIVVYL GVLCILYLLI TKIIIPLVRC WVCPMSICCS 600
  601 GGSGSSKNKS EKRRRGRDEK RRRENSSSAS PNASPRRTHA SPRDAHDTLA RYHGGSDRSY 660
  661 YSSSQYI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle