YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39587201, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFTLLLLVF SIPMFSGLEL RTKRSVAPFL GSGGSTSNAM LIPYNNWHCG SEGISRNFSY  60
   61 GVVQKDCPTL AAALNHCCAI HDDCYGRQDG QEKCDEEFCE CNRMVTRLPT EEGYKCRAAM 120
  121 NDACRILRIV GMFAYGSSDY TDPTKPAGNE ELVPQTVPSI DYDHLYSNCP HVNITLASCS 180
  181 LNFDLCTSVH SIDFCANDLC HCMMDAAESD KLHQHCLPAV AHSCRGILNY SSKVLAERKS 240
  241 AKIFMILALV VVAVVSIGFG VYYMYSKSNN ERNKTTDEGK YLQIHTVESA RSVNPLLTNA 300
  301 D

Type	Start	End	Confidence
Signal Peptide	1	17	0.90
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	242	0.92
Transmembrane Helix	243	265	0.92
Cytoplasmic	266	301	0.91