YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39587039, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFFYFLFLV IFASFGSTAQ IDAVVLDELL REIVDISMSD LRHRLQEAVF ATSFRRKLLE  60
   61 QHHATSSDKN LEKLLDDYIK PQKLSLSLET FTQKPKTTAI PIQLVTADDV AISESGRLFK 120
  121 DDVEYSEGFL TSKLPRVPAY VAVTVVVMAV LTFFLLIGTI IYFLASKSRR STKNLKTLPR 180
  181 GILNPDPLSV QGLSTCHVSP YRNSNSRRNS LYLDQDRAAS SIWAHP

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	138	0.99
Transmembrane Helix	139	164	0.93
Cytoplasmic	165	226	0.98