YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157753946
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVVQNPENP EETISDIFKD PVLDPIKKRV LAILHSLSSV IHVGIFYFLL VQWSKVDIPT  60
   61 VTHFQIFCLV IIGIGLLIIL ALLFVILRME MKIDTHARRF FHIWPLVHIA LSTIYQLVTQ 120
  121 IVLSHWRMYQ IPALYSAWAT AVSVGIHLVL HSISLFWKI

Type	Start	End	Confidence
Cytoplasmic	1	30	0.98
Transmembrane Helix	31	51	0.93
Non-Cytoplasmic	52	62	0.85
Transmembrane Helix	63	87	0.91
Cytoplasmic	88	99	0.95
Transmembrane Helix	100	123	0.85
Non-Cytoplasmic	124	133	0.80
Transmembrane Helix	134	155	0.89
Cytoplasmic	156	159	0.80