YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39586914, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTGGLSDYA DFGEEDANCT QGIQWIKNVF TDCVDTDLKL LGFIIGLISL ALWLIPLFPQ  60
   61 LWQNYKTKKC EGLSLAFLFF WLVGDTCNML GAILTNQQPI QKIIGVYYIF QDLILWAQYG 120
  121 YYMKIYHRPA TTSGRSNTIV VPVLALASVG SFVLLDSASP VESTRFKRSF LESLNHQKGL 180
  181 PLEGILTMWP IFTSYTDMLG YLIGSVAALC YFGGRIPQII KNYQHRSCEG LSLTMFYIIV 240
  241 AANFTYGISV LMATTSWLYL LRHLPWLAGS LGCCCFDAVI ISQYYLYRPK TPSAEDTERA 300
  301 GLLNSQEDSD

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.83
Transmembrane Helix	40	62	0.85
Cytoplasmic	63	72	0.80
Transmembrane Helix	73	95	0.87
Non-Cytoplasmic	96	102	0.76
Transmembrane Helix	103	122	0.83
Cytoplasmic	123	135	0.81
Transmembrane Helix	136	155	0.90
Non-Cytoplasmic	156	194	0.88
Transmembrane Helix	195	214	0.90
Cytoplasmic	215	232	0.85
Transmembrane Helix	233	255	0.89
Non-Cytoplasmic	256	263	0.75
Transmembrane Helix	264	286	0.86
Cytoplasmic	287	310	0.95