YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39586782, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METALSVMPP PISRRIARAM HTNLKKCERL NHVARYPVHP SSAAPHDTKF SKTYLNKDRK  60
   61 FLSAGMLLYY LAAIFKGLHP RVDDDFVDKL NYHYTSAIIF AFAIIVSAKQ YVGYPIQCWV 120
  121 PAQFTDAWEQ YTENYCWVEN TYYLPLTSAF PLEYGDRRAR QISYYQWVPF VLALEALCFY 180
  181 IPCIMWRGLL HWHSGINVQS LTQMACDARM MDADARAATV QTIAGHMEDA LEIQREVTDV 240
  241 SGMCVQKRWA NYVTLLYVFI KMLYLGNVVL QVFMLNSFLG TDNLFYGFHI LRDLLNGREW 300
  301 EVSGNFPRVR VLGNVHHHTV QCVLMINMFN EKIFLFLWFW YFMVAFVSAV SMFHWIIISF 360
  361 LPGQHMKFIR KYLRATDLAT DRQSVKKFVH KFLGYDGVFC MRMISAHAGD ILATELIVAL 420
  421 WHNFNDRVRK SPIEMFEGGV TQSPSKLDAN FKTWLLGQSR AKPPFDGSNP TRGKKRRKSD 480
  481 GYFTFV

Type	Start	End	Confidence
Cytoplasmic	1	60	0.90
Transmembrane Helix	61	79	0.61
Non-Cytoplasmic	80	91	0.60
Transmembrane Helix	92	113	0.69
Cytoplasmic	114	166	0.71
Transmembrane Helix	167	189	0.83
Non-Cytoplasmic	190	256	0.64
Transmembrane Helix	257	280	0.71
Cytoplasmic	281	333	0.62
Transmembrane Helix	334	358	0.89
Non-Cytoplasmic	359	402	0.67
Transmembrane Helix	403	421	0.49
Cytoplasmic	422	486	0.75