YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157770306
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIRLLGLLS VFVLLFGATD SFKAPQHVSA TKGKFFVHTL HSANFFPSTV KVKWEATLNN  60
   61 KPALPNWLRL LPSRHPEIAY LIGTPVTNVQ HVTLHVIAKR LDNFDIQQRM IVINLVEDSL 120
  121 YQGNTQQIFE LPINGLDVED LVSNRERKIS QLENALRNTF RGRNVNPYIA GIRSRYTIPR 180
  181 GKEHIFKNNV GTMVFVGTQQ KFYPGTMAIV KNLQTVPDFC TKPSAVVMNK YFAPTFSVDW 240
  241 CNVAVKNVSA IEEEANNEKL VNVDGEEKST QIKQVEDSSD RPEQPPRELY GYSEHGFSIV 300
  301 LVAIILGVCA LLIFALVLIF FGSREGQKWR DDKTSGETMG EFVTIRDNQK KLRELSLQRQ 360
  361 LLSMGPDTNS TAPSGIHSYL QSRSRAPSTI ARFSKSASRL NDREDTIELL PSVDHIPVGK 420
  421 QTVAEAAKQC GSSLHLYRNP LSDESDEQVT ESSEDEN

Type	Start	End	Confidence
Signal Peptide	1	21	0.98
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	298	0.99
Transmembrane Helix	299	321	0.95
Cytoplasmic	322	457	0.99