YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157776554
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKEKSFDTR KFLIDLASGG TAAAVSKTAV APIERVKLLL QVQDASKTIT ADKRYKGIMD  60
   61 VLVRVPKEQG VAALWRGNLA NVIRYFPTQA LNFAFKDTYK AIFLEGLDKK KDFWKFFAGN 120
  121 LASGGAAGAT SLCFVYPLDF ARTRLAADIG KANDREFKGL ADCLVKIVKS DGPIGLYRGF 180
  181 FVSVQGIIIY RAAYFGMFDT AKMVFAADGK KLNFFAAWGI AQVVTVGSGI LSYPWDTVRR 240
  241 RMMMQSGRKD ILYKNTLDCA KKIIQNEGIS AMFKGALSNV FRGTGGALVL AIYDEIQKFI 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	173	0.64
Transmembrane Helix	174	194	0.84
Non-Cytoplasmic	195	213	0.82
Transmembrane Helix	214	235	0.93
Cytoplasmic	236	300	0.81