YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157755343
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FLIICLVSMQ LLVFLFVFLA TPSDSLNPKR QRFFGTSSEN CAMISTTKRK IAANKLKRAP  60
   61 PIFQGPSNDR QRAIVAAFQH SWTGYKKYAW GHDELLPVSK RFDDPFQLGL TIVDSLDTAI 120
  121 IMGLETETRE GVEWIRNSLN VSPSKSVNVF ETTIRVLGGL LSGYHLTGEE ALLEKAAKLG 180
  181 DNLLNAFTKS KSPIPKSDVD LGTGAAFSPN RGYSSLAEAT TLQLEFRDLS VLTGDKKYEE 240
  241 TAFAASEHVH KTKCAEYDGL CFYHIDENGE FKKTAITLGA RADSYYEYLI KQWLQTKKSI 300
  301 DWLRDDFLQS MKSIKNHLYR QSQPSGLWFI GEIAENDDFY PKMDHLVCFL SGSLALSHLN 360
  361 GLDENGEHIR MAKKIGEICH KMYQNPTGLG PEIIHFNIEN RTDDVSREDS YVKSLDAHSL 420
  421 LRPEAIEAWF YLYRVTKDPK YQEWGWSAFE AIEKYAKVET GGYSSIDNVL RKKVRRRDKM 480
  481 ESFFPAETLK YLYLLLADDQ EILPLDRWVF NTEAHPLPLY N

Type	Start	End	Confidence
Cytoplasmic	1	5	0.46
Transmembrane Helix	6	22	0.56
Non-Cytoplasmic	23	521	0.98