YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39586248, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVIQNLLSA VSPQPDGDFV DKLNYCATTI GLVLASAFIT GWSFVGSPID CWFPAYYKGW  60
   61 WAEYALDYCY VQNTFFVPFS EDKSERSYNW EQLVADKQNT TSLKQTNQIG YYQWVPFILA 120
  121 LQAMLFYFPV VIWRLFYGMA GQNVTSLCNT CTATEGNEES RKGTISTIAG YISQKRNRNL 180
  181 VVKQLSGFQN RANGSAVLTS YLFMKGMFLI NVLLQFFLLK RMLGVDSYFW GAEVTADLWA 240
  241 GNEWPETGNF PRVTMCEYEV RNLDNIHKHS VQCVLMINMF NEKIFVALWW WLCFLMVVTI 300
  301 VNTIYWFIKA SGTSVSKKFI QPYVEDIDPK VKNNRGKLQQ FVSEFLSPDT VFLLRIIELN 360
  361 NGKTPVMELI RDMWRRFNTQ VPPPYSAPPL LVKDAAPLLK NFQDESDM

Type	Start	End	Confidence
Cytoplasmic	1	24	0.90
Transmembrane Helix	25	46	0.82
Non-Cytoplasmic	47	114	0.86
Transmembrane Helix	115	137	0.86
Cytoplasmic	138	200	0.88
Transmembrane Helix	201	219	0.90
Non-Cytoplasmic	220	286	0.86
Transmembrane Helix	287	308	0.96
Cytoplasmic	309	408	0.90