YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39586247, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFLDAFLKG LHKQGDDDAI DRLNYYWTPM LLVIFALTLS AKQYVGQPIQ CWIPAQFTGA  60
   61 WEQYSENYCF VQNTYFISPD KYIPDSEVDR EAAEIGYYQW VPFILGLQAI LFYLPSLFWR 120
  121 LMNFNSGVAL KKMLYGAKKA DRVDEKARHE AAKATGAHLY ESLTLQSRFA KYSSSFTYGG 180
  181 SYLSYLYLFV KFLYFVQIIF QFIILNNFLG TSYTFWGLGI LSDILNGREW EESGHFPRVT 240
  241 MCDFEVRVLG NKHRHTVQCV LMINMFNEKV YVFLWFWLVI VGVATFLNLL NWCRKLLFSS 300
  301 ARKAHIKAYL QVEDNVSDDS RSAQVLDKFV GYKLKSDGVF ITHLIDNNGG SVFSHDVIVD 360
  361 MWSRFLNEEE SRSQKKPGEF DENFS

Type	Start	End	Confidence
Cytoplasmic	1	22	0.89
Transmembrane Helix	23	45	0.68
Non-Cytoplasmic	46	99	0.77
Transmembrane Helix	100	122	0.82
Cytoplasmic	123	186	0.76
Transmembrane Helix	187	215	0.69
Non-Cytoplasmic	216	270	0.89
Transmembrane Helix	271	293	0.91
Cytoplasmic	294	385	0.92