YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RM45_CAEBR
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGRALIRTF LSPTVPVAAC TTQIAGVHHH KEAGDMKRFT GVTRSNKAKA NRNTHVNEKL  60
   61 FRKMRGRKTL LVELPEDSAR ERESEMPPGE MRTELLKRGL NPYKEAQPRV WNEAQVTFQS 120
  121 IYGIADPYVP PETPASFTDV NNKFDEVKQR LQHKFYNWRM GTNRIRKKQG FEKFDVKTFC 180
  181 AKAEDIYERA HKAMEARDKK EMYRCITEYA FAKMWPDVEN GSVRFELVSI VEPSRVVAVR 240
  241 CFDNPPKSGN DIAQITVRMH TRQKLALYDR FGGLILGSED EEKDVVEYVV FENHIAVVDG 300
  301 EWRLHGKIYP KWIEPKQGTH ITHQLTQKEA GVQVAKANAL PLRTTEKLEE AKKEKEAANS 360
  361 S

Type	Start	End	Confidence
Signal Peptide	1	19	0.88
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	361	0.99